Started ../../scripts/make-features.py 2020-04-15 13:42:38.952244
Fasta: /home/badri/PDNET/v4-pssmbugfix/data/cameo/fasta/5ZNS_A.fasta
ID: 5ZNS_A
Outdir: /home/badri/PDNET/v4-pssmbugfix/data/cameo/raw-features/5ZNS_A
A3mfile: /home/badri/PDNET/v4-pssmbugfix/data/cameo/cameo_a3m/5ZNS_A.a3m
L: 385
Seq: DPNRAPPCDSSQCVLPDCFCSEDGTVIPGDLPARDVPQMITITFDDAINNNNIELYKEIFNGKRKNPNGCDIKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERFWSNATVDDWGKEMAGMRVIIEKFSNITDNSVVGVRAPYLRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYFRMPHRCHGNLQSCPTRSHAVWEMVMNELDRREDPSNDEYLPGCAMVDSCSNILTGDQFYNFLNHNFDRHYEQNRAPLGLYFHAAWLKNNPEFLEAFLYWIDEILQSHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSVEGNPACWVPHSCKLTSKEVPGETINLQTCLRCPVNYPWLNDPTGDGHYHHHHHH

Predict secondary structures..
SS already done!

Predict solvent accessibility..
SA already done!

Using existing a3m alignment file..

Clean A3M..

Genrate aln from a3m..
131070 5ZNS_A.a3m
65535 5ZNS_A.aln
ALN already done!


Run alnstats..
alnstats already done!

Run CCMpred..
ALN already done!

Run FreeContact..
ALN already done!

Generate PSSM from alignment (write pssm)..
2020-04-15 13:42:46.448133: I tensorflow/stream_executor/platform/default/dso_loader.cc:44] Successfully opened dynamic library libcuda.so.1
2020-04-15 13:42:46.453410: E tensorflow/stream_executor/cuda/cuda_driver.cc:318] failed call to cuInit: CUDA_ERROR_NO_DEVICE: no CUDA-capable device is detected
2020-04-15 13:42:46.453479: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:169] retrieving CUDA diagnostic information for host: prayog02
2020-04-15 13:42:46.453490: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:176] hostname: prayog02
2020-04-15 13:42:46.453594: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:200] libcuda reported version is: 415.27.0
2020-04-15 13:42:46.453647: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:204] kernel reported version is: 415.27.0
2020-04-15 13:42:46.453657: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:310] kernel version seems to match DSO: 415.27.0
2020-04-15 13:42:46.454493: I tensorflow/core/platform/cpu_feature_guard.cc:142] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2 AVX512F FMA
2020-04-15 13:42:46.487231: I tensorflow/core/platform/profile_utils/cpu_utils.cc:94] CPU Frequency: 1700000000 Hz
2020-04-15 13:42:46.488288: I tensorflow/compiler/xla/service/service.cc:168] XLA service 0x5545be0 executing computations on platform Host. Devices:
2020-04-15 13:42:46.488332: I tensorflow/compiler/xla/service/service.cc:175]   StreamExecutor device (0): <undefined>, <undefined>
2020-04-15 13:42:47.871523: W tensorflow/core/framework/cpu_allocator_impl.cc:81] Allocation of 17179344900 exceeds 10% of system memory.
2020-04-15 13:48:29.857258: W tensorflow/core/framework/cpu_allocator_impl.cc:81] Allocation of 4294836225 exceeds 10% of system memory.
2020-04-15 13:48:32.068578: W tensorflow/core/framework/cpu_allocator_impl.cc:81] Allocation of 17179344900 exceeds 10% of system memory.
msa1hot (65535, 385, 21) w (65535,)
f1d_pssm (385, 22)
saved 5ZNS_A.pssm.npy

Write feature file..
done ../../scripts/make-features.py 2020-04-15 13:48:41.991963