Started ../../scripts/make-features.py 2020-04-15 14:27:33.132498 Fasta: /home/badri/PDNET/v4-pssmbugfix/data/cameo/fasta/6AJJ_A.fasta ID: 6AJJ_A Outdir: /home/badri/PDNET/v4-pssmbugfix/data/cameo/raw-features/6AJJ_A A3mfile: /home/badri/PDNET/v4-pssmbugfix/data/cameo/cameo_a3m/6AJJ_A.a3m L: 943 Seq: MPEVVGSYFQSNAMFAWWGRTVYQFRYIVIGVMVALCLGGGVYGISLGNHVTQSGFYDEGSQSVAASLIGDEVYGRDRTSHVVAILTPPDDKKVTDKAWQKKVTEELDQVVKDHEDQIVGWVGWLKAPDTTDPTVSAMKTQDLRHTFISIPLQGDDDDEILKNYQVVEPELQQVNGGDIRLAGLNPLASELTGTIGEDQKRAEVAAIPLVAVVLFFVFGTVIAAALPAIIGGLAIAGALGIMRLVAEFTPVHFFAQPVVTLIGLGIAIDYGLFIVSRFREEIAEGYDTEAAVRRTVMTSGRTVVFSAVIIVASSVPLLLFPQGFLKSITYAIIASVMLAAILSITVLAAALAILGPRVDALGVTTLLKIPFLANWQFSRRIIDWFAEKTQKTKTREEVERGFWGRLVNVVMKRPIAFAAPILVVMVLLIIPLGQLSLGGISEKYLPPDNAVRQSQEQFDKLFPGFRTEPLTLVMKREDGEPITDAQIADMRAKALTVSGFTDPDNDPEKMWKERPANDSGSKDPSVRVIQNGLENRNDAAKKIDELRALQPPHGIEVFVGGTPALEQDSIHSLFDKLPLMALILIVTTTVLMFLAFGSVVLPIKAALMSALTLGSTMGILTWMFVDGHGSGLMNYTPQPLMAPMIGLIIAVIWGLSTDYEVFLVSRMVEARERGMSTAEAIRIGTATTGRLITGAALILAVVAGAFVFSDLVMMKYLAFGLLIALLLDATIIRMFLVPAVMKLLGDDCWWAPRWMKRVQEKEFNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYEFHLGGIKAFHHHHHHHHHH Predict secondary structures.. SS already done! Predict solvent accessibility.. SA already done! Using existing a3m alignment file.. Clean A3M.. Genrate aln from a3m.. 69506 6AJJ_A.a3m 34753 6AJJ_A.aln ALN already done! Run alnstats.. alnstats already done! Run CCMpred.. ALN already done! Run FreeContact.. ALN already done! Generate PSSM from alignment (write pssm).. 2020-04-15 14:27:41.337170: I tensorflow/stream_executor/platform/default/dso_loader.cc:44] Successfully opened dynamic library libcuda.so.1 2020-04-15 14:27:41.341935: E tensorflow/stream_executor/cuda/cuda_driver.cc:318] failed call to cuInit: CUDA_ERROR_NO_DEVICE: no CUDA-capable device is detected 2020-04-15 14:27:41.342013: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:169] retrieving CUDA diagnostic information for host: prayog02 2020-04-15 14:27:41.342024: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:176] hostname: prayog02 2020-04-15 14:27:41.342138: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:200] libcuda reported version is: 415.27.0 2020-04-15 14:27:41.342181: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:204] kernel reported version is: 415.27.0 2020-04-15 14:27:41.342191: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:310] kernel version seems to match DSO: 415.27.0 2020-04-15 14:27:41.342988: I tensorflow/core/platform/cpu_feature_guard.cc:142] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2 AVX512F FMA 2020-04-15 14:27:41.375202: I tensorflow/core/platform/profile_utils/cpu_utils.cc:94] CPU Frequency: 1700000000 Hz 2020-04-15 14:27:41.376099: I tensorflow/compiler/xla/service/service.cc:168] XLA service 0x4db1d30 executing computations on platform Host. Devices: 2020-04-15 14:27:41.376148: I tensorflow/compiler/xla/service/service.cc:175] StreamExecutor device (0): , 2020-04-15 14:27:41.386280: W tensorflow/core/framework/cpu_allocator_impl.cc:81] Allocation of 2752854636 exceeds 10% of system memory. 2020-04-15 14:27:42.489754: W tensorflow/core/framework/cpu_allocator_impl.cc:81] Allocation of 2752854636 exceeds 10% of system memory. 2020-04-15 14:27:43.565994: W tensorflow/core/framework/cpu_allocator_impl.cc:81] Allocation of 4831084036 exceeds 10% of system memory. 2020-04-15 14:31:33.761402: W tensorflow/core/framework/cpu_allocator_impl.cc:81] Allocation of 4831084036 exceeds 10% of system memory. 2020-04-15 14:31:35.529308: W tensorflow/core/framework/cpu_allocator_impl.cc:81] Allocation of 2752854636 exceeds 10% of system memory. msa1hot (34753, 943, 21) w (34753,) f1d_pssm (943, 22) saved 6AJJ_A.pssm.npy Write feature file.. done ../../scripts/make-features.py 2020-04-15 14:31:41.169242