Started ../../scripts/make-features.py 2020-04-15 13:41:35.892968
Fasta: /home/badri/PDNET/v4-pssmbugfix/data/cameo/fasta/6DKA_I.fasta
ID: 6DKA_I
Outdir: /home/badri/PDNET/v4-pssmbugfix/data/cameo/raw-features/6DKA_I
A3mfile: /home/badri/PDNET/v4-pssmbugfix/data/cameo/cameo_a3m/6DKA_I.a3m
L: 234
Seq: GPLGSPEFMSQYGFVRVPREVEKAIPVVNAPRPRAVVPPPNSETARLVREYAAKELTAPVLNHSLRVFQYSVAIIRDQFPAWDLDQEVLYVTCLLHDIATTDKNMRATKMSFEYYGGILSRELVFNATGGNQDYADAVTEAIIRHQDLTGTGYITTLGLILQIAVTLDNVGSNTDLIHIDTVSAINEQFPRLHWLSCFATVVDTENSRKPWGHTSSLGDDFSKKVICNTFGYTK

Predict secondary structures..
SS already done!

Predict solvent accessibility..
SA already done!

Using existing a3m alignment file..

Clean A3M..

Genrate aln from a3m..
4344 6DKA_I.a3m
2172 6DKA_I.aln
ALN already done!


Run alnstats..
alnstats already done!

Run CCMpred..
ALN already done!

Run FreeContact..
ALN already done!

Generate PSSM from alignment (write pssm)..
2020-04-15 13:41:38.687085: I tensorflow/stream_executor/platform/default/dso_loader.cc:44] Successfully opened dynamic library libcuda.so.1
2020-04-15 13:41:38.691983: E tensorflow/stream_executor/cuda/cuda_driver.cc:318] failed call to cuInit: CUDA_ERROR_NO_DEVICE: no CUDA-capable device is detected
2020-04-15 13:41:38.692060: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:169] retrieving CUDA diagnostic information for host: prayog02
2020-04-15 13:41:38.692071: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:176] hostname: prayog02
2020-04-15 13:41:38.692185: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:200] libcuda reported version is: 415.27.0
2020-04-15 13:41:38.692232: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:204] kernel reported version is: 415.27.0
2020-04-15 13:41:38.692242: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:310] kernel version seems to match DSO: 415.27.0
2020-04-15 13:41:38.692748: I tensorflow/core/platform/cpu_feature_guard.cc:142] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2 AVX512F FMA
2020-04-15 13:41:38.723114: I tensorflow/core/platform/profile_utils/cpu_utils.cc:94] CPU Frequency: 1700000000 Hz
2020-04-15 13:41:38.724051: I tensorflow/compiler/xla/service/service.cc:168] XLA service 0x5ba3020 executing computations on platform Host. Devices:
2020-04-15 13:41:38.724117: I tensorflow/compiler/xla/service/service.cc:175]   StreamExecutor device (0): <undefined>, <undefined>
msa1hot (2172, 234, 21) w (2172,)
f1d_pssm (234, 22)
saved 6DKA_I.pssm.npy

Write feature file..
done ../../scripts/make-features.py 2020-04-15 13:41:39.784611