Started ../../scripts/make-features.py 2020-04-15 13:32:54.216911 Fasta: /home/badri/PDNET/v4-pssmbugfix/data/cameo/fasta/6EDB_B.fasta ID: 6EDB_B Outdir: /home/badri/PDNET/v4-pssmbugfix/data/cameo/raw-features/6EDB_B A3mfile: /home/badri/PDNET/v4-pssmbugfix/data/cameo/cameo_a3m/6EDB_B.a3m L: 455 Seq: SVQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKGETKKKFKDPNADAAPGASKLRAVLEKLKLSRDDISTAAGMVKGVVDHLLLRLKCDSAFRGVGLLNTGSYYEHVKISAPNEFDVMFKLEVPRIQLEEYSNTRAYYFVKFKRNPKENPLSQFLEGEILSASKMLSKFRKIIKEEINDIKDTDVIMKRKRGGSPAVTLLISEKISVDITLALESKSSWPASTQEGLRIQNWLSAKVRKQLRLKPFYLVPKHAKEGNGFQEETWRLSFSHIEKEILNNHGKSKTCCENKEEKCCRKDCLKLMKYLLEQLKERFKDKKHLDKFSSYHVKTAFFHVCTQNPQDSQWDRKDLGLCFDNCVTYFLQCLRTEKLENYFIPEFNLFSSNLIDKRSKEFLTKQIEYERNNEFPVFDEF Predict secondary structures.. SS already done! Predict solvent accessibility.. SA already done! Using existing a3m alignment file.. Clean A3M.. Genrate aln from a3m.. 10854 6EDB_B.a3m 5427 6EDB_B.aln ALN already done! Run alnstats.. alnstats already done! Run CCMpred.. ALN already done! Run FreeContact.. ALN already done! Generate PSSM from alignment (write pssm).. 2020-04-15 13:32:57.953653: I tensorflow/stream_executor/platform/default/dso_loader.cc:44] Successfully opened dynamic library libcuda.so.1 2020-04-15 13:32:57.958772: E tensorflow/stream_executor/cuda/cuda_driver.cc:318] failed call to cuInit: CUDA_ERROR_NO_DEVICE: no CUDA-capable device is detected 2020-04-15 13:32:57.958840: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:169] retrieving CUDA diagnostic information for host: prayog02 2020-04-15 13:32:57.958852: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:176] hostname: prayog02 2020-04-15 13:32:57.958973: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:200] libcuda reported version is: 415.27.0 2020-04-15 13:32:57.959020: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:204] kernel reported version is: 415.27.0 2020-04-15 13:32:57.959030: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:310] kernel version seems to match DSO: 415.27.0 2020-04-15 13:32:57.959797: I tensorflow/core/platform/cpu_feature_guard.cc:142] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2 AVX512F FMA 2020-04-15 13:32:57.991147: I tensorflow/core/platform/profile_utils/cpu_utils.cc:94] CPU Frequency: 1700000000 Hz 2020-04-15 13:32:57.992126: I tensorflow/compiler/xla/service/service.cc:168] XLA service 0x4b25470 executing computations on platform Host. Devices: 2020-04-15 13:32:57.992170: I tensorflow/compiler/xla/service/service.cc:175] StreamExecutor device (0): , msa1hot (5427, 455, 21) w (5427,) f1d_pssm (455, 22) saved 6EDB_B.pssm.npy Write feature file.. done ../../scripts/make-features.py 2020-04-15 13:33:02.853668