Started ../../scripts/make-features.py 2020-04-15 14:17:32.674871 Fasta: /home/badri/PDNET/v4-pssmbugfix/data/cameo/fasta/6EGC_A.fasta ID: 6EGC_A Outdir: /home/badri/PDNET/v4-pssmbugfix/data/cameo/raw-features/6EGC_A A3mfile: /home/badri/PDNET/v4-pssmbugfix/data/cameo/cameo_a3m/6EGC_A.a3m L: 156 Seq: GSHMTRTEIIRELERSLREQEELAKRLKELLRELERLQREGSSDEDVRELLREIKELVEEIEKLAREQKYLVEELKRQQGPPGNEIIRELERSLREQEELAKRLKELLRELERLQREGSSDEDVRELLREIKELVEEIEKLAREQKYLVEELKRQD Predict secondary structures.. SS already done! Predict solvent accessibility.. SA already done! Using existing a3m alignment file.. Clean A3M.. Genrate aln from a3m.. 4132 6EGC_A.a3m 2066 6EGC_A.aln ALN already done! Run alnstats.. alnstats already done! Run CCMpred.. ALN already done! Run FreeContact.. ALN already done! Generate PSSM from alignment (write pssm).. 2020-04-15 14:17:36.177874: I tensorflow/stream_executor/platform/default/dso_loader.cc:44] Successfully opened dynamic library libcuda.so.1 2020-04-15 14:17:36.182809: E tensorflow/stream_executor/cuda/cuda_driver.cc:318] failed call to cuInit: CUDA_ERROR_NO_DEVICE: no CUDA-capable device is detected 2020-04-15 14:17:36.182865: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:169] retrieving CUDA diagnostic information for host: prayog02 2020-04-15 14:17:36.182882: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:176] hostname: prayog02 2020-04-15 14:17:36.182993: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:200] libcuda reported version is: 415.27.0 2020-04-15 14:17:36.183033: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:204] kernel reported version is: 415.27.0 2020-04-15 14:17:36.183043: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:310] kernel version seems to match DSO: 415.27.0 2020-04-15 14:17:36.183486: I tensorflow/core/platform/cpu_feature_guard.cc:142] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2 AVX512F FMA 2020-04-15 14:17:36.211096: I tensorflow/core/platform/profile_utils/cpu_utils.cc:94] CPU Frequency: 1700000000 Hz 2020-04-15 14:17:36.212207: I tensorflow/compiler/xla/service/service.cc:168] XLA service 0x5ed42c0 executing computations on platform Host. Devices: 2020-04-15 14:17:36.212249: I tensorflow/compiler/xla/service/service.cc:175] StreamExecutor device (0): , msa1hot (2066, 156, 21) w (2066,) f1d_pssm (156, 22) saved 6EGC_A.pssm.npy Write feature file.. done ../../scripts/make-features.py 2020-04-15 14:17:37.067690