Started ../../scripts/make-features.py 2020-04-15 14:05:49.537807
Fasta: /home/badri/PDNET/v4-pssmbugfix/data/cameo/fasta/6NX4_A.fasta
ID: 6NX4_A
Outdir: /home/badri/PDNET/v4-pssmbugfix/data/cameo/raw-features/6NX4_A
A3mfile: /home/badri/PDNET/v4-pssmbugfix/data/cameo/cameo_a3m/6NX4_A.a3m
L: 167
Seq: SHMGELEAIVGLGLMYSQLPHHILADVSLKETEENKTKGFDYLLKAAEAGDRQSMILVARAFDSGQNLSPDRCQDWLEALHWYNTALEMTDCDEGGEYDGMQDEPRYMMLAREAEMLFTGGYGLEKDPQRSGDLYTQAAEAAMEAMKGRLANQYYQKAEEAWAQMEE

Predict secondary structures..
SS already done!

Predict solvent accessibility..
SA already done!

Using existing a3m alignment file..

Clean A3M..

Genrate aln from a3m..
131070 6NX4_A.a3m
65535 6NX4_A.aln
ALN already done!


Run alnstats..
alnstats already done!

Run CCMpred..
ALN already done!

Run FreeContact..
ALN already done!

Generate PSSM from alignment (write pssm)..
2020-04-15 14:05:54.594134: I tensorflow/stream_executor/platform/default/dso_loader.cc:44] Successfully opened dynamic library libcuda.so.1
2020-04-15 14:05:54.598797: E tensorflow/stream_executor/cuda/cuda_driver.cc:318] failed call to cuInit: CUDA_ERROR_NO_DEVICE: no CUDA-capable device is detected
2020-04-15 14:05:54.598863: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:169] retrieving CUDA diagnostic information for host: prayog02
2020-04-15 14:05:54.598874: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:176] hostname: prayog02
2020-04-15 14:05:54.599003: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:200] libcuda reported version is: 415.27.0
2020-04-15 14:05:54.599046: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:204] kernel reported version is: 415.27.0
2020-04-15 14:05:54.599056: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:310] kernel version seems to match DSO: 415.27.0
2020-04-15 14:05:54.599552: I tensorflow/core/platform/cpu_feature_guard.cc:142] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2 AVX512F FMA
2020-04-15 14:05:54.635190: I tensorflow/core/platform/profile_utils/cpu_utils.cc:94] CPU Frequency: 1700000000 Hz
2020-04-15 14:05:54.636156: I tensorflow/compiler/xla/service/service.cc:168] XLA service 0x46ef6b0 executing computations on platform Host. Devices:
2020-04-15 14:05:54.636220: I tensorflow/compiler/xla/service/service.cc:175]   StreamExecutor device (0): <undefined>, <undefined>
2020-04-15 14:05:55.220987: W tensorflow/core/framework/cpu_allocator_impl.cc:81] Allocation of 17179344900 exceeds 10% of system memory.
2020-04-15 14:08:24.638209: W tensorflow/core/framework/cpu_allocator_impl.cc:81] Allocation of 4294836225 exceeds 10% of system memory.
2020-04-15 14:08:25.896092: W tensorflow/core/framework/cpu_allocator_impl.cc:81] Allocation of 17179344900 exceeds 10% of system memory.
msa1hot (65535, 167, 21) w (65535,)
f1d_pssm (167, 22)
saved 6NX4_A.pssm.npy

Write feature file..
done ../../scripts/make-features.py 2020-04-15 14:08:33.926028