Started ../../scripts/make-features.py 2020-04-15 14:39:46.588037
Fasta: /home/badri/PDNET/v4-pssmbugfix/data/casp13/fasta/T0950.fasta
ID: T0950
Outdir: /home/badri/PDNET/v4-pssmbugfix/data/casp13/raw-features/T0950
A3mfile: /home/badri/PDNET/v4-pssmbugfix/data/casp13/a3m_from_trRosetta/casp13_a3m/T0950.a3m
L: 353
Seq: MSEIITFPQQTVVYPEINVKTLSQAVKNIWRLSHQQKSGIEIIQEKTLRISLYSRDLDEAARASVPQLQTVLRQLPPQDYFLTLTEIDTELEDPELDDETRNTLLEARSEHIRNLKKDVKGVIRSLRKEANLMASRIADVSNVVILERLESSLKEEQERKAEIQADIAQQEKNKAKLVVDRNKIIESQDVIRQYNLADMFKDYIPNISDLDKLDLANPKKELIKQAIKQGVEIAKKILGNISKGLKYIELADARAKLDERINQINKDCDDLKIQLKGVEQRIAGIEDVHQIDKERTTLLLQAAKLEQAWNIFAKQLQNTIDGKIDQQDLTKIIHKQLDFLDDLALQYHSMLLS

Predict secondary structures..
SS already done!

Predict solvent accessibility..
SA already done!

Using existing a3m alignment file..

Clean A3M..

Genrate aln from a3m..
520 T0950.a3m
260 T0950.aln
ALN already done!


Run alnstats..
alnstats already done!

Run CCMpred..
ALN already done!

Run FreeContact..
ALN already done!

Generate PSSM from alignment (write pssm)..
2020-04-15 14:39:49.392674: I tensorflow/stream_executor/platform/default/dso_loader.cc:44] Successfully opened dynamic library libcuda.so.1
2020-04-15 14:39:49.397254: E tensorflow/stream_executor/cuda/cuda_driver.cc:318] failed call to cuInit: CUDA_ERROR_NO_DEVICE: no CUDA-capable device is detected
2020-04-15 14:39:49.397327: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:169] retrieving CUDA diagnostic information for host: prayog02
2020-04-15 14:39:49.397339: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:176] hostname: prayog02
2020-04-15 14:39:49.397438: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:200] libcuda reported version is: 415.27.0
2020-04-15 14:39:49.397478: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:204] kernel reported version is: 415.27.0
2020-04-15 14:39:49.397488: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:310] kernel version seems to match DSO: 415.27.0
2020-04-15 14:39:49.397892: I tensorflow/core/platform/cpu_feature_guard.cc:142] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2 AVX512F FMA
2020-04-15 14:39:49.427153: I tensorflow/core/platform/profile_utils/cpu_utils.cc:94] CPU Frequency: 1700000000 Hz
2020-04-15 14:39:49.428094: I tensorflow/compiler/xla/service/service.cc:168] XLA service 0x5d299c0 executing computations on platform Host. Devices:
2020-04-15 14:39:49.428150: I tensorflow/compiler/xla/service/service.cc:175]   StreamExecutor device (0): <undefined>, <undefined>
msa1hot (260, 353, 21) w (260,)
f1d_pssm (353, 22)
saved T0950.pssm.npy

Write feature file..
done ../../scripts/make-features.py 2020-04-15 14:39:50.415272