Started ../../scripts/make-features.py 2020-01-01 02:48:56.034466
Fasta: /home/badri/PDNET/v2_64x64/data/casp13/fasta/T0987.fasta
ID: T0987
Outdir: /home/badri/PDNET/v2_64x64/data/casp13/raw-features/T0987
A3mfile: /home/badri/PDNET/v2_64x64/data/casp13/a3m_from_trRosetta/casp13_a3m/T0987.a3m
L: 405
Seq: NAQMGEGRLANYSASGNTFQENPGYTKNYNFSDLQFNPKAITGDVLQGNTIDFEVYGKHNIAASTANWEIRLQLDERLAQYVEKIQVDPKKGVGNSRRTFVRINDSLGRPTNIWKVNYIRANDGLFAGAETTDTQTAPNGVITFEKNLDEIFKEIGADNLKSDRLMYRIYLVSHQDDDKIVPGIESTGYFLTDQDDFYNKLDVSENNSDQFKHGSVNTKYEEANIQTKDGSGSTGANGAIILDHKLTKEKNFSYSTSAKGTPWYANYKIDERLVPYVSGIQMHMVQADKVAYNVAFESGKKVADLAIERREGHENYGMGSITDNDLTKLIDFANASPRPIVVRYVLQLTKPLDEILEEMKAADKIEENAPFGEDFIFDSWLSDTNKKLIQNTYGTGYYYLQDIDG

Predict secondary structures..
SS already done!

Predict solvent accessibility..
86 T0987.a3m
43 T0987.aln
SA already done!

Using existing a3m alignment file..

Process A3M..


Run alnstats..
alnstats already done!

Run CCMpred..
ALN already done!

Run FreeContact..
ALN already done!

Generate PSSM from alignment (generate icinfo and cinfo)..

Generate PSSM from alignment (write pssm)..

Write feature file..
done ../../scripts/make-features.py 2020-01-01 02:48:56.848452