Started ./scripts/make-features.py 2020-04-15 12:27:37.028981
Fasta: /home/badri/PDNET/v4-pssmbugfix/data/psicov/fasta/1hh8A.fasta
ID: 1hh8A
Outdir: /home/badri/PDNET/v4-pssmbugfix/data/psicov/features-raw/feature-generation-jobs/1hh8A
L: 192
Seq: SLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRLFRPNERQVAQL

Predict secondary structures..
SS already done!

Predict solvent accessibility..
SA already done!

Generate alignments..
A3M already done!

Clean A3M..

Genrate aln from a3m..
0 1hh8A.a3m
46416 1hh8A.aln
ALN already done!


Run alnstats..
alnstats already done!

Run CCMpred..
ALN already done!

Run FreeContact..
ALN already done!

Generate PSSM from alignment (write pssm)..
msa1hot (46416, 192, 21) w (46416,)
f1d_pssm (192, 22)
saved 1hh8A.pssm.npy

Write feature file..
done ./scripts/make-features.py 2020-04-15 12:29:13.988817