Started ./scripts/make-features.py 2020-04-15 12:29:15.887668
Fasta: /home/badri/PDNET/v4-pssmbugfix/data/psicov/fasta/1i58A.fasta
ID: 1i58A
Outdir: /home/badri/PDNET/v4-pssmbugfix/data/psicov/features-raw/feature-generation-jobs/1i58A
L: 189
Seq: GSHMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPLT

Predict secondary structures..
SS already done!

Predict solvent accessibility..
SA already done!

Generate alignments..
A3M already done!

Clean A3M..

Genrate aln from a3m..
0 1i58A.a3m
44813 1i58A.aln
ALN already done!


Run alnstats..
alnstats already done!

Run CCMpred..
ALN already done!

Run FreeContact..
ALN already done!

Generate PSSM from alignment (write pssm)..
msa1hot (44813, 189, 21) w (44813,)
f1d_pssm (189, 22)
saved 1i58A.pssm.npy

Write feature file..
done ./scripts/make-features.py 2020-04-15 12:30:44.197520