Started ./scripts/make-features.py 2020-04-15 12:30:46.918407
Fasta: /home/badri/PDNET/v4-pssmbugfix/data/psicov/fasta/1jbeA.fasta
ID: 1jbeA
Outdir: /home/badri/PDNET/v4-pssmbugfix/data/psicov/features-raw/feature-generation-jobs/1jbeA
L: 126
Seq: ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKLGM

Predict secondary structures..
SS already done!

Predict solvent accessibility..
SA already done!

Generate alignments..
A3M already done!

Clean A3M..

Genrate aln from a3m..
0 1jbeA.a3m
74836 1jbeA.aln
ALN already done!


Run alnstats..
alnstats already done!

Run CCMpred..
ALN already done!

Run FreeContact..
ALN already done!

Generate PSSM from alignment (write pssm)..
msa1hot (74836, 126, 21) w (74836,)
f1d_pssm (126, 22)
saved 1jbeA.pssm.npy

Write feature file..
done ./scripts/make-features.py 2020-04-15 12:33:42.989702