Started ./scripts/make-features.py 2020-04-15 12:34:04.750508 Fasta: /home/badri/PDNET/v4-pssmbugfix/data/psicov/fasta/2hs1A.fasta ID: 2hs1A Outdir: /home/badri/PDNET/v4-pssmbugfix/data/psicov/features-raw/feature-generation-jobs/2hs1A L: 99 Seq: PQITLWKRPLVTIKIGGQLKEALLDTGADDTIIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPTPVNIIGRNLLTQIGATLNF Predict secondary structures.. SS already done! Predict solvent accessibility.. SA already done! Generate alignments.. A3M already done! Clean A3M.. Genrate aln from a3m.. 0 2hs1A.a3m 72784 2hs1A.aln ALN already done! Run alnstats.. alnstats already done! Run CCMpred.. ALN already done! Run FreeContact.. ALN already done! Generate PSSM from alignment (write pssm).. msa1hot (72784, 99, 21) w (72784,) f1d_pssm (99, 22) saved 2hs1A.pssm.npy Write feature file.. done ./scripts/make-features.py 2020-04-15 12:36:19.340534